DISCOVERED CRITICAL ENGINE ALIGNMENT ISSUE THAT IS NOT IN THE MANUAL.
The Transmission support yoke only goes onto the transmission housing one way, BUT the support yoke underneath is NOT symmetric. Putting it on the wrong way will YAW the engine and transmission assembly by about a half inch at the back of the transmission from the longitudinal axis of the car. This is NOT shown in the manual. We found it by visually looking at the engine block, and then by placing a 6 foot straight edge along the block, longitudinally, and doing another visual check. It was subtle, but clear, that the engine was slightly yawed to one side.
Be careful with this as it would probably go together this way, and yet throw off the driveline angle wildly, likely resulting in an unexplained vibration. The SHORT side of the support for the YOKE goes to the PASSENGER side.